Genetics & Molecular Biology

If you go to Jason W. Chin's website you can see that his research involves a synthetic genetic code. So yesterday was published a paper on Nature's website where Chin's group made a ribosome capable of reading quadruplet-codons, which means an expansion of the three letters genetic code with 64 possible codons, to a four letters genetic code with 256 possibilities.
This expansion on the genetic code could pave the way to new combinations between the natural and unnatural aminoacids, toward the creation of synthetically designed proteins.

Researchers from the University of Illinois say they know how to exploit an unusual chemical reaction mechanism that allows malaria parasites and many disease-causing bacteria to survive. The findings, detailed in PNAS, could eventually lead to new anti-malarial and antibacterial drugs.
The new study focused on an essential chemical pathway that occurs in malaria parasites and in most bacteria but not in humans or other animals, making it an ideal drug target. Several teams of researchers have spent nearly a decade trying to understand an important player in this cascade of chemical reactions…

Human cells contain 46 strands of DNA that code for all our genes. Certain chemicals and UV light can break these strands into pieces, a process that typically leads to cell death or diseases such as cancer if the damage is not repaired quickly. But new research, published in PNAS, shows for the first time that stem cells will intentionally cut and then repair their own DNA as a mechanism of activating genes that promote the development of new tissues.
The discovery could help researchers develop better ways to activate stem cells, so that they can produce new tissues for therapeutic purposes…

Research published simultaneously in PNAS and Nature details how scientists have successfully transplanted most of the "nose" of the mosquito that spreads malaria into frog eggs and fruit flies and are employing these surrogates to combat the spread of the deadly disease that afflicts 500 million people worldwide. The mosquito's "nose" is centered in its antennae, which are filled with nerve cells covered with special "odorant receptors" that react to different chemical compounds. The insect ORs are comparable to analogous receptors in the human nose and taste buds on the tongue.
"We've…

Previously unrelated disorders which all cause complex defects in brain development and function are linked by a common underlying mechanism. Rett syndrome (RTT), Cornelia de Lange syndrome (CdLS), Alpha-Thalassemia mental Retardation, and X-linked syndrome (ATR-X) have each been linked with distinct abnormalities in chromatin, the spools of proteins and DNA that make up chromosomes and control how genetic information is read in a cell.
The new research, appearing in Developmental Cell, helps to explain why these different chromatin abnormalities all interfere with proper gene expression…

When asked to justify the research I do, I always struggle a little to explain my dissatisfaction with the traditional descriptive, non-quantitative explanations of molecular biological systems. As a glance at a classic molecular cell biology textbook will easily demonstrate, molecular biologists have been tremendously successful with verbal or semi-quantitative explanations of what goes on inside the cell. And in any case, the complexity of the cell is extremely daunting for the would-be theoretical biologist. Cells are among the most complex systems we know of - they're made of hundreds of…

There are known effects of Promoters used in expression of foreign DNA incorporated into the stranger host of choice but unknown effects of promoters used are not known. A promoter is used for the expression of foreign gene into the body of an organism. Unforutately only two known sources of genetic biological transformation are based on bacteria and viruses which cause infections under natural conditions namely Agrobacterium and viruses. In addtion to this physical methods of particle gun etc are less precise. in all methods selectable markers most commonly used are based on anitbiotic…
Arizona State University researchers have developed the first versatile DNA reader that can discriminate between DNA's four core chemical components, the key to unlocking the vital code behind human heredity and health. If the process can be perfected, DNA sequencing could be performed much faster than current technology, and at a fraction of the cost.
The goal is to develop a next-generation DNA sequencing technology to usher in the age of personalized medicine, where knowledge of an individual's complete, 3 billion-long code of DNA information, or genome, will allow for a more tailored…

Researchers from the University of California, San Diego have discovered the origin of strains of the human immunodeficiency virus (HIV) among men who have sex with men. The team says the results are important because knowing the mechanisms by which HIV uses human sex to spread is essential to stopping the HIV epidemic.
It is known that most HIV infections worldwide result from exposure to the HIV virus in semen, made up of seminal cells and the fluid around these calls, called seminal plasma. HIV virus particles contain RNA and exist in the plasma, while infected seminal cells contain HIV…

There is an apocryphal story about a graduate mathematics student at the University of Virginia studying the properties of certain mathematical objects. In his fifth year some killjoy bastard elsewhere published a paper proving that there are no such mathematical objects. He dropped out of the program, and I never did hear where he is today. He's probably making my cappuccino right now.
This week, a professor named Peter Sheridan Dodds published a new paper in Physical Review Letters further fleshing out a theory concerning why a 2/3 power law may apply for metabolic rate. The 2/3 law says…